Label
PostgreSQL , GPU , heteroDB , pg_strom , CUDA , nvidia , DIO , Nvme , SSD, column storage, GPU memory cache
backdrop
HeteroDB pg_strom is a GPU acceleration plug-in for PostgreSQL. Currently, PostgreSQL 11 is supported.
Queries can be accelerated in these scenarios, which is ideal for computing (OLAP) scenarios.
1. FILTER
2. Aggregation
3. JOIN
4, GROUP
PG_strom also introduces some advanced features:
1. Combined with PG CPU parallel computing, the hybrid parallel of CPU and GPU is realized, greatly improving the computing capability.
2. GPU directly accesses SSD, saving memory, shortening access path, and improving access throughput
3. Create a column-store copy of the heap table. custom scan automatically identifies the column-store Copy. If a column-store copy exists, column-store copy is preferred to improve the performance of OLAP SQL.
4. Tables that often need to be calculated can be loaded into the memory of the GPU. When the GPU repeatedly calculates this part of data, it does not need to be repeatedly loaded from the memory or disk.
The introduction of GPU undoubtedly improves the analysis capability of the database.
Hardware configuration
haier, Ling Yue, S5000
1. CPU: i7-8550U (4 cores and 8 threads, turbo boost to 4 GHz)
digoal@digoal-Haier5000A-> lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 8
On-line CPU(s) list: 0-7
Thread(s) per core: 2
Core(s) per socket: 4
Socket(s): 1
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 142
Model name: Intel(R) Core(TM) i7-8550U CPU @ 1.80GHz
Stepping: 10
CPU MHz: 4000.244
CPU max MHz: 4000.0000
CPU min MHz: 400.0000
BogoMIPS: 3984.00
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 8192K
NUMA node0 CPU(s): 0-7
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf eagerfpu pni pclmulqdq dtes64 monitor ds_cpl vmx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch epb intel_pt tpr_shadow vnmi flexpriority ept vpid fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid mpx rdseed adx smap clflushopt xsaveopt xsavec xgetbv1 ibpb ibrs stibp dtherm ida arat pln pts hwp hwp_notify hwp_act_window hwp_epp spec_ctrl intel_stibp
2, Memory: 8G DDR4-2400 * 2
dmidecode
Handle 0x0003, DMI type 17, 40 bytes
Memory Device
Array Handle: 0x0002
Error Information Handle: Not Provided
Total Width: 64 bits
Data Width: 64 bits
Size: 8192 MB
Form Factor: SODIMM
Set: None
Locator: ChannelA-DIMM0
Bank Locator: BANK 0
Type: DDR4
Type Detail: Synchronous Unbuffered (Unregistered)
Speed: 2400 MHz
Manufacturer: 859B
Serial Number: 190ED94E
Asset Tag: 9876543210
Part Number: CT8G4SFS824A.C8FBD1
Rank: 1
Configured Clock Speed: 2400 MHz
Minimum Voltage: Unknown
Maximum Voltage: Unknown
Configured Voltage: 1.2 V
Handle 0x0004, DMI type 17, 40 bytes
Memory Device
Array Handle: 0x0002
Error Information Handle: Not Provided
Total Width: 64 bits
Data Width: 64 bits
Size: 8192 MB
Form Factor: SODIMM
Set: None
Locator: ChannelB-DIMM0
Bank Locator: BANK 2
Type: DDR4
Type Detail: Synchronous Unbuffered (Unregistered)
Speed: 2400 MHz
Manufacturer: Samsung
Serial Number: 35A4CCE1
Asset Tag: 9876543210
Part Number: M471A1K43BB1-CRC
Rank: 1
Configured Clock Speed: 2400 MHz
Minimum Voltage: Unknown
Maximum Voltage: Unknown
Configured Voltage: 1.2 V
3. Hard Disk 1: Jianxing LCH-256V2S
smartctl -x /dev/sda
smartctl 6.5 2016-05-07 r4318 [x86_64-linux-3.10.0-862.3.2.el7.x86_64] (local build)
Copyright (C) 2002-16, Bruce Allen, Christian Franke, www.smartmontools.org
=== START OF INFORMATION SECTION ===
Device Model: LITEON LCH-256V2S
Serial Number: 002448118079
LU WWN Device Id: 5 002303 10035169e
Firmware Version: FC8020A
User Capacity: 256,060,514,304 bytes [256 GB]
Sector Size: 512 bytes logical/physical
Rotation Rate: Solid State Device
Device is: Not in smartctl database [for details use: -P showall]
ATA Version is: ACS-2 (minor revision not indicated)
SATA Version is: SATA 3.1, 6.0 Gb/s (current: 6.0 Gb/s)
Local Time is: Sat Jun 2 16:45:17 2018 CST
SMART support is: Available - device has SMART capability.
SMART support is: Enabled
AAM feature is: Unavailable
APM feature is: Unavailable
Rd look-ahead is: Enabled
Write cache is: Enabled
ATA Security is: Disabled, frozen [SEC2]
Write SCT (Get) Feature Control Command failed: scsi error badly formed scsi parameters
Wt Cache Reorder: Unknown (SCT Feature Control command failed)
4, hard drive 2: Samsung SM961, m.2 2280, 256GB
[root@digoal-Haier5000A ~]# smartctl -x /dev/nvme0n1
smartctl 6.5 2016-05-07 r4318 [x86_64-linux-3.10.0-862.3.2.el7.x86_64] (local build)
Copyright (C) 2002-16, Bruce Allen, Christian Franke, www.smartmontools.org
=== START OF INFORMATION SECTION ===
Model Number: SAMSUNG MZVPW256HEGL-00000
Serial Number: S346NY0J206053
Firmware Version: CXZ7500Q
PCI Vendor/Subsystem ID: 0x144d
IEEE OUI Identifier: 0x002538
Total NVM Capacity: 256,060,514,304 [256 GB]
Unallocated NVM Capacity: 0
Controller ID: 2
Number of Namespaces: 1
Namespace 1 Size/Capacity: 256,060,514,304 [256 GB]
Namespace 1 Utilization: 117,392,015,360 [117 GB]
Namespace 1 Formatted LBA Size: 512
Local Time is: Sat Jun 2 16:46:53 2018 CST
Firmware Updates (0x16): 3 Slots, no Reset required
Optional Admin Commands (0x0017): Security Format Frmw_DL *Other*
Optional NVM Commands (0x001f): Comp Wr_Unc DS_Mngmt Wr_Zero Sav/Sel_Feat
Warning Comp. Temp. Threshold: 70 Celsius
Critical Comp. Temp. Threshold: 73 Celsius
5. GPU:MX150 full blood version
[root@digoal-Haier5000A ~]# nvidia-smi
Sat Jun 2 16:47:23 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 34C P8 N/A / N/A | 39MiB / 2002MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 3217 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
+-----------------------------------------------------------------------------+
hardware requirements
http://heterodb.github.io/pg-strom/install/
Checklist
Server Hardware It requires generic x86_64 hardware that can run Linux operating system supported by CUDA Toolkit. We have no special requirement for CPU, storage and network devices. note002:HW Validation List may help you to choose the hardware. SSD-to-GPU Direct SQL Execution needs SSD devices which support NVMe specification, and to be installed under the same PCIe Root Complex where GPU is located on.
GPU Device PG-Strom requires at least one GPU device on the system, which is supported by CUDA Toolkit, has computing capability 6.0 (Pascal generation) or later; note001:GPU Availability Matrix shows more detailed information. Check this list for the support status of SSD-to-GPU Direct SQL Execution.
Operating System PG-Strom requires Linux operating system for x86_64 architecture, and its distribution supported by CUDA Toolkit. Our recommendation is Red Hat Enterprise Linux or CentOS version 7.x series. - SSD-to-GPU Direct SQL Execution needs Red Hat Enterprise Linux or CentOS version 7.3 or later.
PostgreSQL PG-Strom requires PostgreSQL version 9.6 or later. PostgreSQL v9.6 renew the custom-scan interface for CPU-parallel execution or GROUP BY planning, thus, it allows cooperation of custom-plans provides by extension modules.
CUDA Toolkit PG-Strom requires CUDA Toolkit version 9.1 or later. PG-Strom provides half-precision floating point type (float2), and it internally use half_t type of CUDA C, so we cannot build it with older CUDA Toolkit.
Software Configuration
1, CentOS 7.4 x64
[root@digoal-Haier5000A ~]# uname -a
Linux digoal-Haier5000A.lan 3.10.0-862.3.2.el7.x86_64 #1 SMP Mon May 21 23:36:36 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
gou Xuan when installing the operating system:
最小化
网络管理模块
GNOME（方便配置网络）
Debugging Tools
Development Tools
2, PostgreSQL 10.4
yum -y install coreutils glib2 lrzsz mpstat dstat sysstat e4fsprogs xfsprogs ntp readline-devel zlib-devel openssl-devel pam-devel libxml2-devel libxslt-devel python-devel tcl-devel gcc make smartmontools flex bison perl-devel perl-ExtUtils* openldap-devel jadetex openjade bzip2
wget https://ftp.postgresql.org/pub/source/v10.4/postgresql-10.4.tar.bz2
tar -jxvf postgresql-10.4.tar.bz2
export USE_NAMED_POSIX_SEMAPHORES=1
LIBS=-lpthread CFLAGS="-O3" ./configure --prefix=/home/digoal/pgsql10.4
LIBS=-lpthread CFLAGS="-O3" make world -j 16
LIBS=-lpthread CFLAGS="-O3" make install-world
configure database user environment variables
[digoal@digoal-Haier5000A ~]$ vi ~/env.sh
export PS1="$USER@`/bin/hostname -s`-> "
export PGPORT=1921
export PGDATA=/data01/pg/pg_root$PGPORT
export LANG=en_US.utf8
export PGHOME=/home/digoal/pgsql10.4
export LD_LIBRARY_PATH=$PGHOME/lib:/lib64:/usr/lib64:/usr/local/lib64:/lib:/usr/lib:/usr/local/lib:$LD_LIBRARY_PATH
export PATH=$PGHOME/bin:$PATH:.
export DATE=`date +"%Y%m%d%H%M"`
export MANPATH=$PGHOME/share/man:$MANPATH
export PGHOST=$PGDATA
export PGUSER=postgres
export PGDATABASE=postgres
alias rm='rm -i'
alias ll='ls -lh'
unalias vi
sysctl
/etc/sysctl.d/99-sysctl.conf
# add by digoal.zhou
fs.aio-max-nr = 1048576
fs.file-max = 76724600
kernel.core_pattern= /data01/corefiles/core_%e_%u_%t_%s.%p
# /data01/corefiles事先建好，权限777，如果是软链接，对应的目录修改为777
kernel.sem = 4096 2147483647 2147483646 512000
# 信号量, ipcs -l 或 -u 查看，每16个进程一组，每组信号量需要17个信号量。
kernel.shmall = 107374182
# 所有共享内存段相加大小限制(建议内存的80%)
kernel.shmmax = 274877906944
# 最大单个共享内存段大小(建议为内存一半), >9.2的版本已大幅降低共享内存的使用
kernel.shmmni = 819200
# 一共能生成多少共享内存段，每个PG数据库集群至少2个共享内存段
net.core.netdev_max_backlog = 10000
net.core.rmem_default = 262144
# The default setting of the socket receive buffer in bytes.
net.core.rmem_max = 4194304
# The maximum receive socket buffer size in bytes
net.core.wmem_default = 262144
# The default setting (in bytes) of the socket send buffer.
net.core.wmem_max = 4194304
# The maximum send socket buffer size in bytes.
net.core.somaxconn = 4096
net.ipv4.tcp_max_syn_backlog = 4096
net.ipv4.tcp_keepalive_intvl = 20
net.ipv4.tcp_keepalive_probes = 3
net.ipv4.tcp_keepalive_time = 60
net.ipv4.tcp_mem = 8388608 12582912 16777216
net.ipv4.tcp_fin_timeout = 5
net.ipv4.tcp_synack_retries = 2
net.ipv4.tcp_syncookies = 1
# 开启SYN Cookies。当出现SYN等待队列溢出时，启用cookie来处理，可防范少量的SYN攻击
net.ipv4.tcp_timestamps = 1
# 减少time_wait
net.ipv4.tcp_tw_recycle = 0
# 如果=1则开启TCP连接中TIME-WAIT套接字的快速回收，但是NAT环境可能导致连接失败，建议服务端关闭它
net.ipv4.tcp_tw_reuse = 1
# 开启重用。允许将TIME-WAIT套接字重新用于新的TCP连接
net.ipv4.tcp_max_tw_buckets = 262144
net.ipv4.tcp_rmem = 8192 87380 16777216
net.ipv4.tcp_wmem = 8192 65536 16777216
net.nf_conntrack_max = 1200000
net.netfilter.nf_conntrack_max = 1200000
vm.dirty_background_bytes = 409600000
# 系统脏页到达这个值，系统后台刷脏页调度进程 pdflush（或其他） 自动将(dirty_expire_centisecs/100）秒前的脏页刷到磁盘
vm.dirty_expire_centisecs = 3000
# 比这个值老的脏页，将被刷到磁盘。3000表示30秒。
vm.dirty_ratio = 95
# 如果系统进程刷脏页太慢，使得系统脏页超过内存 95 % 时，则用户进程如果有写磁盘的操作（如fsync, fdatasync等调用），则需要主动把系统脏页刷出。
# 有效防止用户进程刷脏页，在单机多实例，并且使用CGROUP限制单实例IOPS的情况下非常有效。
vm.dirty_writeback_centisecs = 100
# pdflush（或其他）后台刷脏页进程的唤醒间隔， 100表示1秒。
vm.mmap_min_addr = 65536
vm.overcommit_memory = 1
# 在分配内存时，允许少量over malloc, 如果设置为 1, 则认为总是有足够的内存，内存较少的测试环境可以使用 1 .
vm.overcommit_ratio = 90
# 当overcommit_memory = 2 时，用于参与计算允许指派的内存大小。
vm.swappiness = 0
# 关闭交换分区
vm.zone_reclaim_mode = 0
# 禁用 numa, 或者在vmlinux中禁止.
net.ipv4.ip_local_port_range = 40000 65535
# 本地自动分配的TCP, UDP端口号范围
fs.nr_open=20480000
# 单个进程允许打开的文件句柄上限
selinux
/etc/sysconfig/selinux
SELINUX=disabled
firewall
systemctl disable firewalld
ulimit
/etc/security/limits.d/20-nproc.conf
* soft nofile 1024000
* hard nofile 1024000
* soft nproc unlimited
* hard nproc unlimited
* soft core unlimited
* hard core unlimited
* soft memlock unlimited
* hard memlock unlimited
sshd
/etc/ssh/sshd_config
UseDNS no
rc.local
chmod +x /etc/rc.d/rc.local
/etc/rc.local
for ((i=0;i<8;i++))
do
echo performance > /sys/devices/system/cpu/cpu${i}/cpufreq/scaling_governor
done
if test -f /sys/kernel/mm/transparent_hugepage/enabled; then
echo never > /sys/kernel/mm/transparent_hugepage/enabled
fi
target, after the configuration, enter the string interface, there is no need to start the graphical interface.
systemctl set-default multi-user.target
Other
systemctl enable sshd
systemctl disable libvirtd.service
systemctl disable avahi-daemon.service
systemctl disable cryptsetup.target
systemctl disable systemd-udev-settle
systemctl disable systemd-udev-trigger
systemctl disable systemd-udevd
NVME hard disk partition (used to test gpu_direct_access_nvme)
note that use parted alignment, 1MiB is the unit alignment
PostgreSQL 10 + PostGIS + Sharding(pg_pathman) + MySQL(fdw external table) on ECS Deployment Guide (suitable for new users)-collection level
mkfs.ext4 /dev/nvme0n1p3 -m 0 -O extent,uninit_bg -E lazy_itable_init=1 -T largefile -L data01
echo "LABEL=data01 /data01 ext4 defaults,noatime,nodiratime,nodelalloc,barrier=0,data=writeback 0 0" >> /etc/fstab
mkdir /data01
mount -a
mkdir /data01/pg
chown digoal:digoal /data01/pg
the performance is good, FSYNC 8K, close to 20 microseconds RT.
digoal@digoal-Haier5000A-> pg_test_fsync
5 seconds per test
O_DIRECT supported on this platform for open_datasync and open_sync.
Compare file sync methods using one 8kB write:
(in wal_sync_method preference order, except fdatasync is Linux's default)
open_datasync 48690.840 ops/sec 21 usecs/op
fdatasync 43169.165 ops/sec 23 usecs/op
fsync 39566.305 ops/sec 25 usecs/op
fsync_writethrough n/a
open_sync 47421.965 ops/sec 21 usecs/op
Compare file sync methods using two 8kB writes:
(in wal_sync_method preference order, except fdatasync is Linux's default)
open_datasync 25555.806 ops/sec 39 usecs/op
fdatasync 31886.334 ops/sec 31 usecs/op
fsync 29025.142 ops/sec 34 usecs/op
fsync_writethrough n/a
open_sync 23726.243 ops/sec 42 usecs/op
Compare open_sync with different write sizes:
(This is designed to compare the cost of writing 16kB in different write
open_sync sizes.)
1 * 16kB open_sync write 36906.246 ops/sec 27 usecs/op
2 * 8kB open_sync writes 23886.218 ops/sec 42 usecs/op
4 * 4kB open_sync writes 10152.480 ops/sec 98 usecs/op
8 * 2kB open_sync writes 4758.217 ops/sec 210 usecs/op
16 * 1kB open_sync writes 2323.391 ops/sec 430 usecs/op
Test if fsync on non-write file descriptor is honored:
(If the times are similar, fsync() can sync data written on a different
descriptor.)
write, fsync, close 33724.404 ops/sec 30 usecs/op
write, close, fsync 33855.126 ops/sec 30 usecs/op
Non-sync'ed 8kB writes:
write 309504.352 ops/sec 3 usecs/op
Install nvidia drivers
1. Download the NVIDIA driver software on the graphical interface (or download it from another computer)
https://www.nvidia.com/Download/index.aspx
Product Type: GeForce
Product Series: GeForce MX100 Series (Notebook)
Product: GeForce MX150
Operating System: Linux 64-bit
Language: English (US)
LINUX X64 (AMD64/EM64T) DISPLAY DRIVER
Version: 390.59
Release Date: 2018.5.16
Operating System: Linux 64-bit
Language: English (US)
File Size: 78.89 MB
2. Install EPEL
yum install -y https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
3. Install dkms
yum install -y dkms
4. Eliminate the default nouveau module
vi /etc/modprobe.d/blacklist.conf
blacklist nouveau
options nouveau modeset=0
5. Package and start the image, filter nouveau, and restart
mv /boot/initramfs-$(uname -r).img /boot/initramfs-$(uname -r).img.bak
dracut -v /boot/initramfs-$(uname -r).img $(uname -r)
reboot
after the restart, confirm that the nouveau module is not loaded.
[root@digoal-Haier5000A ~]# lsmod|grep nouveau
[root@digoal-Haier5000A ~]#
6. Install the nvidia driver
chmod +x NVIDIA-Linux-x86_64-390.59.run
./NVIDIA-Linux-x86_64-390.59.run
选择dkms模式安装，打包到内核。不需要安装32位兼容。
7. Restart
reboot
check that the nvidia driver is installed. You may see more after you install cuda.
[root@digoal-Haier5000A ~]# lsmod|grep nvi
nvidia_drm 39676 0
nvidia_modeset 1104417 1 nvidia_drm
nvidia 14355766 1 nvidia_modeset
ipmi_msghandler 46608 2 ipmi_devintf,nvidia
drm_kms_helper 176920 2 i915,nvidia_drm
drm 397988 4 i915,drm_kms_helper,nvidia_drm
i2c_core 63151 7 drm,i915,i2c_i801,i2c_hid,drm_kms_helper,i2c_algo_bit,nvidia
8. View GPU commands
[root@digoal-Haier5000A Downloads]# nvidia-smi
Sat Jun 2 17:19:13 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 34C P8 N/A / N/A | 39MiB / 2002MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 3217 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
+-----------------------------------------------------------------------------+
9. Persistence-M settings
nvidia-persistenced
graphical settings
nvidia-settings
install the cuda development SDK
https://developer.download.nvidia.com/compute/cuda/9.2/Prod/docs/sidebar/CUDA_Quick_Start_Guide.pdf
https://developer.nvidia.com/cuda-downloads
try to install it locally because the NVIDIA website may not have an ICP filing and the YUM remote installation may fail.
rpm -ivh cuda-repo-rhel7-9-2-local-9.2.88-1.x86_64
rpm -ivh cuda-repo-rhel7-9-2-local-cublas-update-1-1.0-1.x86_64
View the decompression position
[root@digoal-Haier5000A Downloads]# rpm -ql cuda-repo-rhel7-9-2-local-9.2.88-1.x86_64
/etc/yum.repos.d/cuda-9-2-local.repo
/var/cuda-repo-9-2-local
/var/cuda-repo-9-2-local/7fa2af80.pub
/var/cuda-repo-9-2-local/cuda-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-command-line-tools-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-compiler-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-core-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cublas-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cublas-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cudart-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cudart-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cufft-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cufft-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cuobjdump-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cupti-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-curand-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-curand-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cusolver-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cusolver-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cusparse-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-cusparse-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-demo-suite-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-documentation-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-driver-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-drivers-396.26-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-gdb-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-gdb-src-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-gpu-library-advisor-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-libraries-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-libraries-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-license-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-memcheck-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-minimal-build-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-misc-headers-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-npp-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-npp-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nsight-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvcc-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvdisasm-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvgraph-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvgraph-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvml-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvprof-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvprune-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvrtc-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvrtc-dev-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvtx-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-nvvp-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-runtime-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-samples-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-toolkit-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-tools-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/cuda-visual-tools-9-2-9.2.88-1.x86_64.rpm
/var/cuda-repo-9-2-local/nvidia-kmod-396.26-2.el7.x86_64.rpm
/var/cuda-repo-9-2-local/repodata
/var/cuda-repo-9-2-local/repodata/1e82ba5b81feb3fa502b8dfbb2689edb6b0f5ab8-primary.sqlite.bz2
/var/cuda-repo-9-2-local/repodata/23b6855765efc34307fe97a18aa5ce6d951b7c06-filelists.sqlite.bz2
/var/cuda-repo-9-2-local/repodata/54919473a10f99ff748c387d85601e4a2124fecb-other.xml.gz
/var/cuda-repo-9-2-local/repodata/6246de73ef704c53fca5cb7d85eacb8b9f464de2-filelists.xml.gz
/var/cuda-repo-9-2-local/repodata/99425e908b465268c4ad6a9f4e73aea633185aa4-other.sqlite.bz2
/var/cuda-repo-9-2-local/repodata/efb5b97e11e48f4655ca99a8d8f100fc356cd7dd-primary.xml.gz
/var/cuda-repo-9-2-local/repodata/repomd.xml
/var/cuda-repo-9-2-local/repodata/repomd.xml.asc
/var/cuda-repo-9-2-local/repodata/repomd.xml.key
/var/cuda-repo-9-2-local/xorg-x11-drv-nvidia-396.26-1.el7.x86_64.rpm
/var/cuda-repo-9-2-local/xorg-x11-drv-nvidia-devel-396.26-1.el7.x86_64.rpm
/var/cuda-repo-9-2-local/xorg-x11-drv-nvidia-gl-396.26-1.el7.x86_64.rpm
/var/cuda-repo-9-2-local/xorg-x11-drv-nvidia-libs-396.26-1.el7.x86_64.rpm
[root@digoal-Haier5000A Downloads]# rpm -ql cuda-repo-rhel7-9-2-local-cublas-update-1-1.0-1.x86_64
/etc/yum.repos.d/cuda-9-2-local-cublas-update-1.repo
/var/cuda-repo-9-2-local-cublas-update-1
/var/cuda-repo-9-2-local-cublas-update-1/7fa2af80.pub
/var/cuda-repo-9-2-local-cublas-update-1/cuda-cublas-9-2-9.2.88.1-1.x86_64.rpm
/var/cuda-repo-9-2-local-cublas-update-1/cuda-cublas-dev-9-2-9.2.88.1-1.x86_64.rpm
/var/cuda-repo-9-2-local-cublas-update-1/repodata
/var/cuda-repo-9-2-local-cublas-update-1/repodata/0c7614c17eab9ec65bdfa77a5bd4cffb5bfd9328-filelists.sqlite.bz2
/var/cuda-repo-9-2-local-cublas-update-1/repodata/86df6103e53c35c9d3e20cbdcbcbc0417afbbf59-primary.xml.gz
/var/cuda-repo-9-2-local-cublas-update-1/repodata/a989dc1ca4dcb5ac1a50426a0bb64ab4b8e61095-filelists.xml.gz
/var/cuda-repo-9-2-local-cublas-update-1/repodata/bcb2d70b10555ac50af7b59464faaec74d9908d1-other.xml.gz
/var/cuda-repo-9-2-local-cublas-update-1/repodata/d06871ed40ddae040e5037c481d24833d2a299ef-other.sqlite.bz2
/var/cuda-repo-9-2-local-cublas-update-1/repodata/ebcdaf81da75b0584341bce140e865d33a7ca63c-primary.sqlite.bz2
/var/cuda-repo-9-2-local-cublas-update-1/repodata/repomd.xml
/var/cuda-repo-9-2-local-cublas-update-1/repodata/repomd.xml.asc
/var/cuda-repo-9-2-local-cublas-update-1/repodata/repomd.xml.key
install RPM
cd /var/cuda-repo-9-2-local/
nohup yum install -y *.rpm >/tmp/install_cuda9.2.log 2>&1 &
等待安装结束，再安装升级包
cd /var/cuda-repo-9-2-local-cublas-update-1/
nohup yum install -y *.rpm >/tmp/install_cuda9.2.update.log 2>&1 &
check whether all installation logs are successful.
After the installation is successful, you can see some CUDA commands
[root@digoal-Haier5000A Downloads]# nvidia-cuda-mps-
nvidia-cuda-mps-control nvidia-cuda-mps-server
install pg_strom
su - digoal
git clone https://github.com/heterodb/pg-strom
cd pg-strom
. ~/env.sh
USE_PGXS=1 make
USE_PGXS=1 make install
configure database
1. Initialize the database cluster
initdb -D $PGDATA -U postgres -E SQL_ASCII --locale=C
2. Configure the database
vi $PGDATA/postgresq.auto.conf
listen_addresses = '0.0.0.0'
port = 1921
max_connections = 200
unix_socket_directories = '/tmp,.'
shared_buffers = 4GB
work_mem = 32MB
maintenance_work_mem = 128MB
dynamic_shared_memory_type = posix
shared_preload_libraries = 'pg_strom'
vacuum_cost_delay = 0
vacuum_cost_limit = 10000
bgwriter_delay = 10ms
bgwriter_lru_maxpages = 900
bgwriter_lru_multiplier = 5.0
effective_io_concurrency = 0
max_worker_processes = 100
max_parallel_workers_per_gather = 4
max_parallel_workers = 8
wal_level = minimal
synchronous_commit = off
full_page_writes = off
wal_buffers = 64MB
wal_writer_delay = 10ms
checkpoint_timeout = 35min
max_wal_size = 8GB
min_wal_size = 2GB
checkpoint_completion_target = 0.1
max_wal_senders = 0
random_page_cost = 1.1
log_destination = 'csvlog'
logging_collector = on
log_truncate_on_rotation = on
log_checkpoints = on
log_connections = on
log_disconnections = on
log_error_verbosity = verbose
log_timezone = 'PRC'
log_autovacuum_min_duration = 0
autovacuum_freeze_max_age = 1200000000
autovacuum_multixact_freeze_max_age = 1400000000
autovacuum_vacuum_cost_delay = 0ms
vacuum_freeze_table_age = 1150000000
vacuum_multixact_freeze_table_age = 1150000000
datestyle = 'iso, mdy'
timezone = 'PRC'
lc_messages = 'C'
lc_monetary = 'C'
lc_numeric = 'C'
lc_time = 'C'
default_text_search_config = 'pg_catalog.english'
start the database
pg_ctl start
create a plug-in
postgres=# create extension pg_strom;
create a Test table
1. Create a test table
create unlogged table test1 (id int, c1 int, c2 int, c3 int, c4 int, c5 int, c6 int, info text, crt_time timestamp);
create unlogged table test2 (id int, c1 int, c2 int, c3 int, c4 int, c5 int, c6 int, info text, crt_time timestamp);
2. Write test data
insert into test1 select
id,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
md5(random()::text),
clock_timestamp()
from generate_series(1,10000000)
t(id);
insert into test2 select
id,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
random()*1000,
md5(random()::text),
clock_timestamp()
from generate_series(1,100000000)
t(id);
postgres=# \dt+
List of relations
Schema | Name | Type | Owner | Size | Description
--------+------------------+-------+----------+---------+-------------
public | test1 | table | postgres | 965 MB |
public | test2 | table | postgres | 9647 MB |
test 1-0.1 billion record aggregation test
monitor GPU usage
for ((i=1;i>0;)) ; do nvidia-smi ;sleep 0.3; done
for example
Sat Jun 2 18:06:47 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 45C P0 N/A / N/A | 1904MiB / 2002MiB | 74% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 3217 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
| 0 13936 C ...gres: postgres postgres [local] EXPLAIN 651MiB |
| 0 15011 C ...orker: parallel worker for PID 13936 31MiB |
| 0 15012 C ...orker: parallel worker for PID 13936 543MiB |
| 0 15013 C ...orker: parallel worker for PID 13936 543MiB |
| 0 15014 C ...orker: parallel worker for PID 13936 31MiB |
+-----------------------------------------------------------------------------+
1. CPU single-thread performance
postgres=# set pg_strom.enabled=off;
SET
postgres=# set max_parallel_workers_per_gather =0;
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2;
QUERY PLAN
-------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=2484568.10..2484568.11 rows=1 width=8) (actual time=10267.721..10267.721 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=523958 read=710610
-> Seq Scan on public.test2 (cost=0.00..2234568.08 rows=100000008 width=0) (actual time=0.047..6228.239 rows=100000000 loops=1)
Output: id, c1, c2, c3, c4, c5, c6, info, crt_time
Buffers: shared hit=523958 read=710610
Planning time: 0.027 ms
Execution time: 10267.740 ms
(8 rows)
2. CPU 8 parallel performance
postgres=# alter table test2 set (parallel_workers =8);
ALTER TABLE
postgres=# set max_parallel_workers=8;
SET
postgres=# set max_parallel_workers_per_gather =8;
SET
postgres=# set min_parallel_table_scan_size =0;
SET
postgres=# set min_parallel_index_scan_size =0;
SET
postgres=# set parallel_setup_cost =0;
SET
postgres=# set parallel_tuple_cost =0;
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2;
QUERY PLAN
--------------------------------------------------------------------------------------------------------------------------------------------------------
Finalize Aggregate (cost=1390818.04..1390818.05 rows=1 width=8) (actual time=3880.696..3880.696 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=71018 read=85656
-> Gather (cost=1390818.01..1390818.02 rows=8 width=8) (actual time=3880.594..3880.689 rows=9 loops=1)
Output: (PARTIAL count(*))
Workers Planned: 8
Workers Launched: 8
Buffers: shared hit=71018 read=85656
-> Partial Aggregate (cost=1390818.01..1390818.02 rows=1 width=8) (actual time=3875.612..3875.612 rows=1 loops=9)
Output: PARTIAL count(*)
Buffers: shared hit=523746 read=710822
Worker 0: actual time=3871.383..3871.383 rows=1 loops=1
Buffers: shared hit=47504 read=77059
Worker 1: actual time=3874.584..3874.584 rows=1 loops=1
Buffers: shared hit=59711 read=79174
Worker 2: actual time=3875.274..3875.274 rows=1 loops=1
Buffers: shared hit=63269 read=83568
Worker 3: actual time=3875.374..3875.374 rows=1 loops=1
Buffers: shared hit=47974 read=78593
Worker 4: actual time=3875.672..3875.672 rows=1 loops=1
Buffers: shared hit=50391 read=78277
Worker 5: actual time=3875.673..3875.673 rows=1 loops=1
Buffers: shared hit=62747 read=80742
Worker 6: actual time=3876.171..3876.171 rows=1 loops=1
Buffers: shared hit=60133 read=74830
Worker 7: actual time=3876.076..3876.076 rows=1 loops=1
Buffers: shared hit=60999 read=72923
-> Parallel Seq Scan on public.test2 (cost=0.00..1359568.01 rows=12500001 width=0) (actual time=6.153..2455.395 rows=11111111 loops=9)
Buffers: shared hit=523746 read=710822
Worker 0: actual time=3.037..2499.978 rows=10089603 loops=1
Buffers: shared hit=47504 read=77059
Worker 1: actual time=6.264..2479.669 rows=11249685 loops=1
Buffers: shared hit=59711 read=79174
Worker 2: actual time=6.939..2491.519 rows=11893797 loops=1
Buffers: shared hit=63269 read=83568
Worker 3: actual time=7.031..2505.125 rows=10251927 loops=1
Buffers: shared hit=47974 read=78593
Worker 4: actual time=7.339..2440.868 rows=10422108 loops=1
Buffers: shared hit=50391 read=78277
Worker 5: actual time=7.338..2419.677 rows=11622609 loops=1
Buffers: shared hit=62747 read=80742
Worker 6: actual time=7.750..2494.325 rows=10932003 loops=1
Buffers: shared hit=60133 read=74830
Worker 7: actual time=7.874..2459.809 rows=10847682 loops=1
Buffers: shared hit=60999 read=72923
Planning time: 0.034 ms
Execution time: 3912.956 ms
(47 rows)
3. Pure GPU computing performance
postgres=# set pg_strom.enabled=on;
SET
postgres=# set max_parallel_workers_per_gather =0;
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2;
QUERY PLAN
-------------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=1234571.56..1234571.57 rows=1 width=8) (actual time=19079.585..19079.585 rows=1 loops=1)
Output: pgstrom.sum((pgstrom.nrows()))
Buffers: shared hit=524347 read=710389
-> Custom Scan (GpuPreAgg) on public.test2 (cost=1234567.99..1234570.54 rows=204 width=8) (actual time=19079.579..19079.581 rows=1 loops=1)
Output: (pgstrom.nrows())
Reduction: NoGroup
GPU Projection: pgstrom.nrows()
Outer Scan: public.test2 (cost=0.00..1234567.99 rows=100000008 width=0) (actual time=41.911..11316.219 rows=100000000 loops=1)
Buffers: shared hit=524347 read=710389
Planning time: 0.072 ms
Execution time: 19200.596 ms
(11 rows)
4. CPU + GPU Hybrid parallel (JOIN)
postgres=# explain (analyze,verbose,timing,costs,buffers) select test1.c1,count(*) from test1 join test2 using (id) group by 1;
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
QUERY PLAN
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Finalize GroupAggregate (cost=914544.97..914585.01 rows=1001 width=12) (actual time=19136.788..19137.590 rows=1001 loops=1)
Output: test1.c1, count(*)
Group Key: test1.c1
Buffers: shared hit=87871 read=291228 dirtied=93457
-> Sort (cost=914544.97..914554.98 rows=4004 width=12) (actual time=19136.782..19137.047 rows=5005 loops=1)
Output: test1.c1, (PARTIAL count(*))
Sort Key: test1.c1
Sort Method: quicksort Memory: 427kB
Buffers: shared hit=87871 read=291228 dirtied=93457
-> Gather (cost=913894.98..914305.39 rows=4004 width=12) (actual time=19134.168..19135.630 rows=5005 loops=1)
Output: test1.c1, (PARTIAL count(*))
Workers Planned: 4
Workers Launched: 4
Buffers: shared hit=87871 read=291228 dirtied=93457
-> Partial HashAggregate (cost=912894.98..912904.99 rows=1001 width=12) (actual time=18898.188..18898.378 rows=1001 loops=5)
Output: test1.c1, PARTIAL count(*)
Group Key: test1.c1
Buffers: shared hit=400675 read=957516 dirtied=93457
Worker 0: actual time=18831.297..18831.439 rows=1001 loops=1
Buffers: shared hit=81851 read=162222
Worker 1: actual time=18826.660..18826.794 rows=1001 loops=1
Buffers: shared hit=79165 read=171741
Worker 2: actual time=18853.051..18853.252 rows=1001 loops=1
Buffers: shared hit=75827 read=164053
Worker 3: actual time=18846.072..18846.363 rows=1001 loops=1
Buffers: shared hit=75961 read=168272
-> Parallel Custom Scan (GpuJoin) on public.test2 (cost=305821.31..900394.95 rows=2500004 width=4) (actual time=5137.898..18534.841 rows=2000000 loops=5)
Output: test1.c1
GPU Projection: test1.c1::integer
Outer Scan: public.test2 (cost=0.00..1484568.02 rows=25000002 width=4) (actual time=52.988..10885.120 rows=100000000 loops=1)
Depth 1: GpuHashJoin (plan nrows: 25000002...10000017, actual nrows: 100000000...10000000)
HashKeys: test2.id
JoinQuals: (test1.id = test2.id)
KDS-Hash (size plan: 1306.54MB, exec: 619.89MB)
Buffers: shared hit=400675 read=957516 dirtied=93457
Worker 0: actual time=5070.397..18501.451 rows=1782000 loops=1
Buffers: shared hit=81851 read=162222
Worker 1: actual time=5081.957..18469.909 rows=2278432 loops=1
Buffers: shared hit=79165 read=171741
Worker 2: actual time=5089.948..18480.672 rows=1782000 loops=1
Buffers: shared hit=75827 read=164053
Worker 3: actual time=5079.179..18429.854 rows=2375568 loops=1
Buffers: shared hit=75961 read=168272
-> Seq Scan on public.test1 (cost=0.00..223457.17 rows=10000017 width=8) (actual time=0.048..1327.631 rows=10000000 loops=1)
Output: test1.c1, test1.id
Buffers: shared read=123457 dirtied=93457
Planning time: 0.432 ms
Execution time: 19543.995 ms
(48 rows)
5. CPU 8 parallel energy band filtering conditions
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 where c1=1 and c2=1 and c3=1;
QUERY PLAN
---------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=1453318.02..1453318.03 rows=1 width=8) (actual time=3102.109..3102.110 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=84048 read=77143
-> Gather (cost=0.00..1453318.02 rows=1 width=0) (actual time=3102.106..3102.106 rows=0 loops=1)
Workers Planned: 8
Workers Launched: 8
Buffers: shared hit=84048 read=77143
-> Parallel Seq Scan on public.test2 (cost=0.00..1453318.02 rows=1 width=0) (actual time=3097.455..3097.455 rows=0 loops=9)
Filter: ((test2.c1 = 1) AND (test2.c2 = 1) AND (test2.c3 = 1))
Rows Removed by Filter: 11111111
Buffers: shared hit=523785 read=710783
Worker 0: actual time=3095.289..3095.289 rows=0 loops=1
Buffers: shared hit=48354 read=77435
Worker 1: actual time=3097.338..3097.338 rows=0 loops=1
Buffers: shared hit=54859 read=81727
Worker 2: actual time=3097.529..3097.529 rows=0 loops=1
Buffers: shared hit=62407 read=75553
Worker 3: actual time=3097.385..3097.385 rows=0 loops=1
Buffers: shared hit=57156 read=75919
Worker 4: actual time=3097.045..3097.045 rows=0 loops=1
Buffers: shared hit=65263 read=85744
Worker 5: actual time=3096.643..3096.643 rows=0 loops=1
Buffers: shared hit=48228 read=81173
Worker 6: actual time=3097.603..3097.603 rows=0 loops=1
Buffers: shared hit=58163 read=83321
Worker 7: actual time=3096.654..3096.654 rows=0 loops=1
Buffers: shared hit=45307 read=72768
Planning time: 0.068 ms
Execution time: 3132.210 ms
(29 rows)
6. GPU 8 parallel with filtering conditions
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 where c1=1 and c2=1 and c3=1;
QUERY PLAN
----------------------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=623874.35..623874.36 rows=1 width=8) (actual time=13098.067..13098.067 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=60280 read=120792
-> Gather (cost=216409.65..623874.35 rows=1 width=0) (actual time=13098.063..13098.063 rows=0 loops=1)
Workers Planned: 8
Workers Launched: 8
Buffers: shared hit=60280 read=120792
-> Parallel Custom Scan (GpuScan) on public.test2 (cost=216409.65..623874.35 rows=0 width=0) (actual time=12303.088..12303.088 rows=0 loops=9)
GPU Filter: ((test2.c1 = 1) AND (test2.c2 = 1) AND (test2.c3 = 1))
Rows Removed by GPU Filter: 11111111
Buffers: shared hit=523974 read=710758
Worker 0: actual time=12196.062..12196.062 rows=0 loops=1
Buffers: shared hit=57502 read=73923
Worker 1: actual time=12188.136..12188.136 rows=0 loops=1
Buffers: shared hit=56825 read=75433
Worker 2: actual time=12193.043..12193.043 rows=0 loops=1
Buffers: shared hit=58796 read=72821
Worker 3: actual time=12186.943..12186.943 rows=0 loops=1
Buffers: shared hit=58045 read=73340
Worker 4: actual time=12217.669..12217.669 rows=0 loops=1
Buffers: shared hit=57882 read=74376
Worker 5: actual time=12192.314..12192.314 rows=0 loops=1
Buffers: shared hit=58102 read=75124
Worker 6: actual time=12225.335..12225.335 rows=0 loops=1
Buffers: shared hit=57429 read=70332
Worker 7: actual time=12232.576..12232.576 rows=0 loops=1
Buffers: shared hit=59113 read=74617
Planning time: 0.101 ms
Execution time: 13578.649 ms
(29 rows)
gpu memory balance used by each GPU worker
Sat Jun 2 20:52:58 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 47C P0 N/A / N/A | 932MiB / 2002MiB | 100% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 2268 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2269 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2270 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2271 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2272 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2273 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2274 C ...orker: parallel worker for PID 28341 31MiB |
| 0 2275 C ...orker: parallel worker for PID 28341 31MiB |
| 0 28317 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
| 0 28341 C ...gres: postgres postgres [local] EXPLAIN 31MiB |
+-----------------------------------------------------------------------------+
7. GPU-DIO-SSD with filtering conditions in parallel
postgres=# set pg_strom.nvme_strom_enabled =on;
SET
postgres=# set pg_strom.nvme_strom_threshold ='512MB';
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 where c1=1 and c2=1 and c3=1;
QUERY PLAN
--------------------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=418113.02..418113.03 rows=1 width=8) (actual time=8871.531..8871.531 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=207615 read=263564
-> Gather (cost=145142.91..418113.02 rows=1 width=0) (actual time=8871.525..8871.525 rows=0 loops=1)
Workers Planned: 8
Workers Launched: 8
Buffers: shared hit=207615 read=263564
-> Parallel Custom Scan (GpuScan) on public.test2 (cost=145142.91..418113.02 rows=0 width=0) (actual time=7928.145..7928.145 rows=0 loops=9)
GPU Filter: ((test2.c1 = 1) AND (test2.c2 = 1) AND (test2.c3 = 1))
Rows Removed by GPU Filter: 11111111
NVMe-Strom: enabled
Buffers: shared hit=523907 read=710661
Worker 0: actual time=8131.075..8131.075 rows=0 loops=1
Buffers: shared read=7711
Worker 1: actual time=7585.861..7585.861 rows=0 loops=1
Buffers: shared hit=154265 read=192730
Worker 2: actual time=7802.970..7802.970 rows=0 loops=1
Buffers: shared read=7711
Worker 3: actual time=7932.922..7932.922 rows=0 loops=1
Buffers: shared read=7711
Worker 4: actual time=8003.104..8003.104 rows=0 loops=1
Buffers: shared read=7711
Worker 5: actual time=8221.710..8221.710 rows=0 loops=1
Buffers: shared read=7711
Worker 6: actual time=7803.256..7803.256 rows=0 loops=1
Buffers: shared read=7711
Worker 7: actual time=7602.142..7602.142 rows=0 loops=1
Buffers: shared hit=162027 read=208101
Planning time: 0.132 ms
Execution time: 9235.097 ms
(30 rows)
the memory usage of each gpu worker is unbalanced.
Sat Jun 2 20:56:13 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 44C P0 N/A / N/A | 1876MiB / 2002MiB | 92% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 3124 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3125 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3126 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3127 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3128 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3129 C ...orker: parallel worker for PID 28341 31MiB |
| 0 3130 C ...orker: parallel worker for PID 28341 543MiB |
| 0 3131 C ...orker: parallel worker for PID 28341 543MiB |
| 0 28317 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
| 0 28341 C ...gres: postgres postgres [local] EXPLAIN 543MiB |
+-----------------------------------------------------------------------------+
Parallelism reduced to 2, balanced.
postgres=# set max_parallel_workers_per_gather =2;
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 where c1=1 and c2=1 and c3=1 and c4=1;
QUERY PLAN
-------------------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=559751.74..559751.75 rows=1 width=8) (actual time=7412.132..7412.132 rows=1 loops=1)
Output: count(*)
Buffers: shared hit=216548 read=246112
-> Gather (cost=19063.33..559751.73 rows=1 width=0) (actual time=7412.128..7412.128 rows=0 loops=1)
Workers Planned: 2
Workers Launched: 2
Buffers: shared hit=216548 read=246112
-> Parallel Custom Scan (GpuScan) on public.test2 (cost=19063.33..559751.73 rows=0 width=0) (actual time=7305.039..7305.039 rows=0 loops=3)
GPU Filter: ((test2.c1 = 1) AND (test2.c2 = 1) AND (test2.c3 = 1) AND (test2.c4 = 1))
Rows Removed by GPU Filter: 33333333
NVMe-Strom: enabled
Buffers: shared hit=524110 read=710458
Worker 0: actual time=7280.772..7280.772 rows=0 loops=1
Buffers: shared hit=154649 read=230901
Worker 1: actual time=7272.441..7272.441 rows=0 loops=1
Buffers: shared hit=152913 read=233445
Planning time: 0.107 ms
Execution time: 7824.767 ms
(18 rows)
Sat Jun 2 20:59:00 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 44C P0 N/A / N/A | 1684MiB / 2002MiB | 93% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 4397 C ...orker: parallel worker for PID 28341 543MiB |
| 0 4398 C ...orker: parallel worker for PID 28341 543MiB |
| 0 28317 C ...bgworker: PG-Strom GPU memory keeper 29MiB |
| 0 28341 C ...gres: postgres postgres [local] EXPLAIN 543MiB |
+-----------------------------------------------------------------------------+
Problem
https://github.com/heterodb/pg-strom/issues/370
8. Pure GPU_DIO_nvme performance
postgres=# set pg_strom.nvme_strom_enabled =on;
SET
postgres=# set pg_strom.nvme_strom_threshold ='1GB';
SET
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2;
QUERY PLAN
-------------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=1234571.56..1234571.57 rows=1 width=8) (actual time=10301.458..10301.458 rows=1 loops=1)
Output: pgstrom.sum((pgstrom.nrows()))
Buffers: shared hit=524181 read=710387
-> Custom Scan (GpuPreAgg) on public.test2 (cost=1234567.99..1234570.54 rows=204 width=8) (actual time=10301.451..10301.453 rows=1 loops=1)
Output: (pgstrom.nrows())
Reduction: NoGroup
GPU Projection: pgstrom.nrows()
Outer Scan: public.test2 (cost=0.00..1234567.99 rows=100000008 width=0) (actual time=177.537..3042.619 rows=100000000 loops=1)
NVMe-Strom: enabled
Buffers: shared hit=524181 read=710387
Planning time: 0.116 ms
Execution time: 10520.800 ms
(12 rows)
problem
A small problem occurred. When gpu_direct_access_ssd is used, if the table is larger than 9GB, CUDA reports a memory mapping error.
https://github.com/heterodb/pg-strom/issues/367
https://github.com/kaigai/nvme-kmod/blob/master/nvme_strom/nvme_strom.c
9. CPU + GPU_DIO_nvme Hybrid parallel performance (JOIN)
postgres=# explain (analyze,verbose,timing,costs,buffers) select test1.c1,count(*) from test1 join test2 using (id) group by 1;
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
INFO: expand KDS
QUERY PLAN
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Finalize GroupAggregate (cost=708783.64..708823.68 rows=1001 width=12) (actual time=16162.597..16163.296 rows=1001 loops=1)
Output: test1.c1, count(*)
Group Key: test1.c1
Buffers: shared hit=123491 read=7677
-> Sort (cost=708783.64..708793.65 rows=4004 width=12) (actual time=16162.591..16162.822 rows=5005 loops=1)
Output: test1.c1, (PARTIAL count(*))
Sort Key: test1.c1
Sort Method: quicksort Memory: 427kB
Buffers: shared hit=123491 read=7677
-> Gather (cost=708133.64..708544.05 rows=4004 width=12) (actual time=15914.039..16161.651 rows=5005 loops=1)
Output: test1.c1, (PARTIAL count(*))
Workers Planned: 4
Workers Launched: 4
Buffers: shared hit=123491 read=7677
-> Partial HashAggregate (cost=707133.64..707143.65 rows=1001 width=12) (actual time=15579.679..15579.830 rows=1001 loops=5)
Output: test1.c1, PARTIAL count(*)
Group Key: test1.c1
Buffers: shared hit=523976 read=834049
Worker 0: actual time=15885.505..15885.593 rows=1001 loops=1
Buffers: shared read=7711
Worker 1: actual time=15272.357..15272.479 rows=1001 loops=1
Buffers: shared hit=208395 read=386160
Worker 2: actual time=15225.538..15225.908 rows=1001 loops=1
Buffers: shared hit=192090 read=424790
Worker 3: actual time=15601.174..15601.265 rows=1001 loops=1
Buffers: shared read=7711
-> Parallel Custom Scan (GpuJoin) on public.test2 (cost=288004.63..694633.62 rows=2500004 width=4) (actual time=10879.658..15351.492 rows=2000000 loops=5)
Output: test1.c1
GPU Projection: test1.c1::integer
Outer Scan: public.test2 (cost=0.00..1484568.02 rows=25000002 width=4) (actual time=440.105..440.109 rows=100000000 loops=1)
Depth 1: GpuHashJoin (plan nrows: 25000002...10000017, actual nrows: 100000000...10000000)
HashKeys: test2.id
JoinQuals: (test1.id = test2.id)
KDS-Hash (size plan: 1306.54MB, exec: 619.89MB)
NVMe-Strom: enabled
Buffers: shared hit=523976 read=834049
Worker 0: actual time=15772.052..15820.060 rows=624591 loops=1
Buffers: shared read=7711
Worker 1: actual time=3685.616..14771.079 rows=4372137 loops=1
Buffers: shared hit=208395 read=386160
Worker 2: actual time=3681.552..14800.492 rows=3754090 loops=1
Buffers: shared hit=192090 read=424790
Worker 3: actual time=15473.791..15527.277 rows=624591 loops=1
Buffers: shared read=7711
-> Seq Scan on public.test1 (cost=0.00..223457.17 rows=10000017 width=8) (actual time=0.009..816.463 rows=10000000 loops=1)
Output: test1.c1, test1.id
Buffers: shared hit=123457
Planning time: 0.156 ms
Execution time: 16597.190 ms
(49 rows)
test 2 GPU asynchronous column storage cache
static data or table partitions can be converted to a column storage format that is more convenient for GPU parallel computing and stored. When a custom scan is performed, the system automatically determines whether the column store cache exists. If so, the column store cache is used first.
Improved performance.
1. pg_strom.ccache_base_dir configuration column storage directory
directories can be stored in memory
directories can also be stored in high-speed storage
mkdir /data01/pg/cc
pg_strom.ccache_base_dir='/data01/pg/cc'
2. pg_strom.ccache_num_builders set BUILD workers (how many parallel BUILD CACHE processes are enabled)
pg_strom.ccache_num_builders=4
3. pg_strom.ccache_databases set which databases need to BUILD the column storage cache
pg_strom.ccache_databases='postgres,template1'
pg_ctl restart -m fast
4. pgstrom_ccache_enabled(regclass) function to BUILD a cache column
note that before adding ccache, a VM file must exist in the table. Use vacuum analyze table to generate a new table. Otherwise, you will encounter the problems mentioned later.
postgres=# select pgstrom_ccache_enabled('test1');
pgstrom_ccache_enabled
------------------------
enabled
(1 row)
postgres=# select pgstrom_ccache_enabled('test2');
pgstrom_ccache_enabled
------------------------
enabled
(1 row)
View the BUILD column cache process in the background
digoal@digoal-Haier5000A-> top -c -u digoal
top - 18:23:06 up 2:14, 4 users, load average: 0.46, 0.14, 0.14
Tasks: 181 total, 3 running, 178 sleeping, 0 stopped, 0 zombie
%Cpu(s): 13.7 us, 11.4 sy, 0.0 ni, 74.9 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st
KiB Mem : 16066164 total, 6462116 free, 380404 used, 9223644 buff/cache
KiB Swap: 2097148 total, 2097148 free, 0 used. 15096228 avail Mem
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
15355 digoal 20 0 4944028 6088 2928 R 99.3 0.0 0:29.96 postgres: bgworker: PG-Strom ccache-builder2
15353 digoal 20 0 4944028 6120 2976 R 99.0 0.0 0:33.66 postgres: bgworker: PG-Strom ccache-builder4
if you do not want to cache a table, use disable.
pgstrom_ccache_disabled(regclass)
5. pgstrom.ccache_info: view the tables that have been cached in the BUILD column.
postgres=# SELECT * FROM pgstrom.ccache_info ;
database_id | table_id | block_nr | nitems | length | ctime | atime
-------------+----------+----------+--------+--------+-------+-------
(0 rows)
6. Attention,
6.1 currently, if any row in the column store table is modified, the corresponding CHUNK (128MB by default) in the column store where the row is located will become invalid. (But does not affect the query, only the CHUNCK data is read from the HEAP table)
6.2 if you want to DROP DATABAS, you need to remove the corresponding DATABASE from the pg_strom.ccache_databases configuration first. Otherwise, the build worker will be connected to it, causing the DROP DATABASE to fail.
7. Test. After the column store is built, it can be used transparently.
explain (analyze,verbose,timing,costs,buffers) select test1.c1,count(*) from test1 join test2 using (id) group by 1;
Problem
ccache has not been built.
https://github.com/heterodb/pg-strom/issues/369
postgres=# select * from pgstrom.ccache_builder_info ;
builder_id | state | database_id | table_id | block_nr
------------+---------+-------------+----------+----------
0 | loading | 13212 | |
1 | loading | 13212 | test2 | 0
(2 rows)
postgres=# select * from pgstrom.ccache_builder_info ;
builder_id | state | database_id | table_id | block_nr
------------+---------+-------------+----------+----------
0 | loading | 13212 | test2 | 131072
1 | loading | 13212 | test1 | 81920
(2 rows)
[root@digoal-Haier5000A Downloads]# cd /data01/
[root@digoal-Haier5000A data01]# ll
total 20
drwx------ 2 root root 16384 Jun 2 12:48 lost+found
drwx------ 4 digoal digoal 4096 Jun 2 18:20 pg
[root@digoal-Haier5000A data01]# cd pg/
[root@digoal-Haier5000A pg]# ll
total 8
drwxrwxr-x 3 digoal digoal 4096 Jun 2 18:22 cc
drwx------ 20 digoal digoal 4096 Jun 2 21:15 pg_root1921
[root@digoal-Haier5000A pg]# cd cc
[root@digoal-Haier5000A cc]# ll
total 0
[root@digoal-Haier5000A cc]# ll -la
total 12
drwxrwxr-x 3 digoal digoal 4096 Jun 2 18:22 .
drwx------ 4 digoal digoal 4096 Jun 2 18:20 ..
drwx------ 2 digoal digoal 4096 Jun 2 18:22 .pg_strom.ccache.1921
[root@digoal-Haier5000A cc]# cd .
[root@digoal-Haier5000A cc]# cd .pg_strom.ccache.1921/
[root@digoal-Haier5000A .pg_strom.ccache.1921]# ll
total 0
[root@digoal-Haier5000A .pg_strom.ccache.1921]# ll -la
total 8
drwx------ 2 digoal digoal 4096 Jun 2 18:22 .
drwxrwxr-x 3 digoal digoal 4096 Jun 2 18:22 ..
[root@digoal-Haier5000A Downloads]# pstack 10501
#0 0x00007f702d722e60 in __lseek_nocancel () from /lib64/libpthread.so.0
#1 0x00000000007604a4 in FileSeek ()
#2 0x0000000000787973 in mdnblocks ()
#3 0x00007f7026be02f3 in __ccache_preload_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#4 0x00007f7026be0e5a in ccache_preload_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#5 0x00007f7026be1422 in ccache_tryload_one_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#6 0x00007f7026be1880 in ccache_tryload_chilly_chunks () from /home/digoal/pgsql10.4/lib/pg_strom.so
#7 0x00007f7026be22e7 in ccache_builder_main () from /home/digoal/pgsql10.4/lib/pg_strom.so
#8 0x00000000006ff81a in StartBackgroundWorker ()
#9 0x0000000000709e3b in maybe_start_bgworkers ()
#10 0x000000000070ec1e in reaper ()
#11 <signal handler called>
#12 0x00007f702d43cc53 in __select_nocancel () from /lib64/libc.so.6
#13 0x00000000004762c8 in ServerLoop ()
#14 0x000000000070d872 in PostmasterMain ()
#15 0x0000000000478801 in main ()
[root@digoal-Haier5000A Downloads]#
[root@digoal-Haier5000A Downloads]#
[root@digoal-Haier5000A Downloads]#
[root@digoal-Haier5000A Downloads]# pstack 10501
#0 0x00007f702d446163 in __epoll_wait_nocancel () from /lib64/libc.so.6
#1 0x000000000076898e in WaitEventSetWait ()
#2 0x0000000000768f60 in WaitLatch ()
#3 0x00007f7026be21dc in ccache_builder_main () from /home/digoal/pgsql10.4/lib/pg_strom.so
#4 0x00000000006ff81a in StartBackgroundWorker ()
#5 0x0000000000709e3b in maybe_start_bgworkers ()
#6 0x000000000070ec1e in reaper ()
#7 <signal handler called>
#8 0x00007f702d43cc53 in __select_nocancel () from /lib64/libc.so.6
#9 0x00000000004762c8 in ServerLoop ()
#10 0x000000000070d872 in PostmasterMain ()
#11 0x0000000000478801 in main ()
[root@digoal-Haier5000A Downloads]# pstack 10502
#0 0x00007f702d722e60 in __lseek_nocancel () from /lib64/libpthread.so.0
#1 0x00000000007604a4 in FileSeek ()
#2 0x0000000000787973 in mdnblocks ()
#3 0x00007f7026be02f3 in __ccache_preload_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#4 0x00007f7026be0e5a in ccache_preload_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#5 0x00007f7026be1422 in ccache_tryload_one_chunk () from /home/digoal/pgsql10.4/lib/pg_strom.so
#6 0x00007f7026be1880 in ccache_tryload_chilly_chunks () from /home/digoal/pgsql10.4/lib/pg_strom.so
#7 0x00007f7026be22e7 in ccache_builder_main () from /home/digoal/pgsql10.4/lib/pg_strom.so
#8 0x00000000006ff81a in StartBackgroundWorker ()
#9 0x0000000000709e3b in maybe_start_bgworkers ()
#10 0x000000000070ec1e in reaper ()
#11 <signal handler called>
#12 0x00007f702d43cc53 in __select_nocancel () from /lib64/libc.so.6
#13 0x00000000004762c8 in ServerLoop ()
#14 0x000000000070d872 in PostmasterMain ()
#15 0x0000000000478801 in main ()
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
10501 digoal 20 0 4944028 6068 2916 R 99.0 0.0 0:38.32 postgres: bgworker: PG-Strom ccache-builder2
10502 digoal 20 0 4944032 6016 2868 R 98.0 0.0 0:42.17 postgres: bgworker: PG-Strom ccache-builder1
troubleshooting
the establishment of ccache depends on the VM file. Therefore, the newly created table may not have a VM generated, resulting in a very slow construction of ccache.
vacuum analyze test1;
vacuum analyze test2;
之后在加入ccache就可以了.
postgres=# select * from pgstrom.ccache_info ;
database_id | table_id | block_nr | nitems | length | ctime | atime
-------------+----------+----------+---------+-----------+-------------------------------+-------------------------------
13212 | test1 | 81920 | 1327104 | 135679872 | 2018-06-02 21:56:17.858585+08 | 2018-06-02 21:56:17.046762+08
13212 | test1 | 0 | 1327104 | 135680192 | 2018-06-02 21:56:16.22478+08 | 2018-06-02 21:56:15.338388+08
13212 | test1 | 65536 | 1327104 | 135680152 | 2018-06-02 21:56:17.070299+08 | 2018-06-02 21:56:16.224782+08
13212 | test1 | 98304 | 1327104 | 135681512 | 2018-06-02 21:56:22.719973+08 | 2018-06-02 21:56:21.911972+08
13212 | test1 | 49152 | 1327104 | 135679792 | 2018-06-02 21:56:21.922209+08 | 2018-06-02 21:56:21.112403+08
13212 | test1 | 32768 | 1327104 | 135680792 | 2018-06-02 21:56:17.046759+08 | 2018-06-02 21:56:16.224326+08
13212 | test1 | 16384 | 1327104 | 135678992 | 2018-06-02 21:56:16.224311+08 | 2018-06-02 21:56:15.33839+08
(7 rows)
With ccache, the MX150 GPU accelerates three times faster than the eight parallel CPUs.
postgres=# set max_parallel_workers_per_gather =0;
SET
postgres=# explain select count(*) from test2 where c1=1;
QUERY PLAN
----------------------------------------------------------------------------------------
Aggregate (cost=1256074.72..1256074.73 rows=1 width=8)
-> Custom Scan (GpuPreAgg) on test2 (cost=1256071.15..1256073.70 rows=204 width=8)
Reduction: NoGroup
Outer Scan: test2 (cost=4000.00..1256040.80 rows=97135 width=0)
Outer Scan Filter: (c1 = 1)
CCache: enabled
NVMe-Strom: enabled
(7 rows)
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 where c1=1;
QUERY PLAN
-----------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=1256074.72..1256074.73 rows=1 width=8) (actual time=1591.368..1591.368 rows=1 loops=1)
Output: pgstrom.sum((pgstrom.nrows()))
Buffers: shared hit=38539
-> Custom Scan (GpuPreAgg) on public.test2 (cost=1256071.15..1256073.70 rows=204 width=8) (actual time=1591.358..1591.359 rows=1 loops=1)
Output: (pgstrom.nrows())
Reduction: NoGroup
GPU Projection: pgstrom.nrows(), test2.c1
Outer Scan: public.test2 (cost=4000.00..1256040.80 rows=97135 width=0) (actual time=5.501..807.749 rows=3218104 loops=1)
Outer Scan Filter: (test2.c1 = 1)
Rows Removed by Outer Scan Filter: 3118251
CCache Hits: 73
NVMe-Strom: enabled
Buffers: shared hit=38539
Planning time: 0.094 ms
Execution time: 1832.954 ms
(15 rows)
postgres=# explain (analyze,verbose,timing,costs,buffers) select count(*) from test2 ;
QUERY PLAN
---------------------------------------------------------------------------------------------------------------------------------------------
Aggregate (cost=1271669.37..1271669.38 rows=1 width=8) (actual time=813.647..813.647 rows=1 loops=1)
Output: pgstrom.sum((pgstrom.nrows()))
Buffers: shared hit=5769
-> Custom Scan (GpuPreAgg) on public.test2 (cost=1271665.80..1271668.35 rows=204 width=8) (actual time=813.640..813.641 rows=1 loops=1)
Output: (pgstrom.nrows())
Reduction: NoGroup
GPU Projection: pgstrom.nrows()
Outer Scan: public.test2 (cost=4000.00..1240415.80 rows=100000008 width=0) (actual time=0.084..139.266 rows=100000000 loops=1)
CCache Hits: 75
NVMe-Strom: enabled
Buffers: shared hit=5769
Planning time: 0.076 ms
Execution time: 1029.638 ms
(13 rows)
Test 3: external table stored in GPU columns
http://heterodb.github.io/pg-strom/gstore_fdw/
if you have some data that needs to be queried frequently (referring to analysis query), and the GPU memory can be installed. Data can be stored in the memory of the GPU to improve access speed (or reduce the number of times they repeatedly read from the memory or disk to the GPU) and improve efficiency.
This can be achieved by using gstore_fdw.
1. Create an external table
postgres=# CREATE FOREIGN TABLE ft1 (
id int,
c1 int2, c2 int2, c3 int2, c4 int2, c5 int2
)
SERVER gstore_fdw OPTIONS(pinning '0', format 'pgstrom');
CREATE FOREIGN TABLE
Time: 0.602 ms
postgres=# CREATE FOREIGN TABLE ft2 (
id int,
c1 int2, c2 int2, c3 int2, c4 int2, c5 int2
)
SERVER gstore_fdw OPTIONS(pinning '0', format 'pgstrom');
CREATE FOREIGN TABLE
Time: 0.593 ms
2. Batch input data (0.1 billion, 10 million)
postgres=# insert into ft1 select generate_series(1,100000000), random()*32767, random()*32767, random()*32767, random()*32767, random()*32767;
INSERT 0 100000000
Time: 37254.593 ms (00:37.255)
postgres=# insert into ft2 select generate_series(1,10000000), random()*32767, random()*32767, random()*32767, random()*32767, random()*32767;
INSERT 0 10000000
Time: 3898.133 ms (00:03.898)
view gstore_fdw table Statistics
postgres=# select * from pgstrom.gstore_fdw_chunk_info ;
database_oid | table_oid | revision | xmin | xmax | pinning | format | rawsize | nitems
--------------+-----------+----------+------+------+---------+---------+------------+-----------
13212 | 33329 | 2 | 2 | 0 | 0 | pgstrom | 140000368 | 10000000
13212 | 33332 | 3 | 2 | 0 | 0 | pgstrom | 1400000368 | 100000000
(2 rows)
nvidia-smi
Sat Jun 2 19:03:52 2018
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 396.26 Driver Version: 396.26 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce MX150 On | 00000000:01:00.0 Off | N/A |
| N/A 40C P8 N/A / N/A | 727MiB / 2002MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 18556 C ...bgworker: PG-Strom GPU memory keeper 717MiB |
+-----------------------------------------------------------------------------+
4. Test full aggregation
postgres=# explain (analyze,verbose,timing,costs,buffers) select c1,count(*) from ft1 group by 1;
QUERY PLAN
---------------------------------------------------------------------------------------------------------------------------------------------
GroupAggregate (cost=50885.38..50887.43 rows=1 width=10) (actual time=20307.148..20313.774 rows=32768 loops=1)
Output: c1, pgstrom.sum((pgstrom.nrows()))
Group Key: ft1.c1
-> Sort (cost=50885.38..50885.89 rows=204 width=10) (actual time=20307.143..20308.607 rows=32768 loops=1)
Output: c1, (pgstrom.nrows())
Sort Key: ft1.c1
Sort Method: quicksort Memory: 3073kB
-> Custom Scan (GpuPreAgg) (cost=50875.00..50877.55 rows=204 width=10) (actual time=20299.260..20301.464 rows=32768 loops=1)
Output: c1, (pgstrom.nrows())
Reduction: Local
GPU Projection: ft1.c1, pgstrom.nrows()
-> Foreign Scan on public.ft1 (cost=0.00..0.00 rows=100000000 width=2) (actual time=0.002..6229.338 rows=100000000 loops=1)
Output: c1
Planning time: 0.088 ms
Execution time: 20447.266 ms
(15 rows)
5. Test the GPU internal FILTER
postgres=# explain (analyze,verbose,timing,costs,buffers) select c1,count(*) from ft1 where c2=1 group by 1;
QUERY PLAN
---------------------------------------------------------------------------------------------------------------------------------------------
GroupAggregate (cost=300885.38..300887.43 rows=1 width=10) (actual time=3881.090..3881.615 rows=2817 loops=1)
Output: c1, pgstrom.sum((pgstrom.nrows()))
Group Key: ft1.c1
-> Sort (cost=300885.38..300885.89 rows=204 width=10) (actual time=3881.085..3881.169 rows=2817 loops=1)
Output: c1, (pgstrom.nrows())
Sort Key: ft1.c1
Sort Method: quicksort Memory: 229kB
-> Custom Scan (GpuPreAgg) (cost=300875.00..300877.55 rows=204 width=10) (actual time=3880.511..3880.677 rows=2817 loops=1)
Output: c1, (pgstrom.nrows())
Reduction: Local
GPU Projection: ft1.c1, pgstrom.nrows()
-> Foreign Scan on public.ft1 (cost=0.00..250000.00 rows=100000000 width=2) (actual time=0.917..3860.842 rows=2955 loops=1)
Output: c1
Filter: (ft1.c2 = 1)
Rows Removed by Filter: 99997045
Planning time: 0.107 ms
Execution time: 4007.820 ms
(17 rows)
6. Test the internal JOIN of GPU
postgres=# explain (analyze,verbose,timing,costs,buffers) select ft1.c1, count(*) from ft1 join ft2 on (ft1.id=ft2.id and ft1.c1=1 and ft2.c1=1) group by 1;
QUERY PLAN
-----------------------------------------------------------------------------------------------------------------------------------------------------
GroupAggregate (cost=177345263386.38..177345263388.43 rows=1 width=10) (actual time=4283.412..4283.412 rows=0 loops=1)
Output: ft1.c1, pgstrom.sum((pgstrom.nrows()))
Group Key: ft1.c1
Buffers: temp read=124 written=62
-> Sort (cost=177345263386.38..177345263386.89 rows=204 width=10) (actual time=4283.410..4283.410 rows=0 loops=1)
Output: ft1.c1, (pgstrom.nrows())
Sort Method: quicksort Memory: 25kB
Buffers: temp read=124 written=62
-> Custom Scan (GpuPreAgg) (cost=177345263376.00..177345263378.55 rows=204 width=10) (actual time=4283.408..4283.408 rows=0 loops=1)
Output: ft1.c1, (pgstrom.nrows())
Reduction: Local
GPU Projection: ft1.c1, pgstrom.nrows()
Buffers: temp read=124 written=62
-> Hash Join (cost=189063.00..175001509376.00 rows=5000000000000 width=2) (actual time=4283.216..4283.216 rows=0 loops=1)
Output: ft1.c1
Hash Cond: (ft1.id = ft2.id)
Buffers: temp read=124 written=62
-> Foreign Scan on public.ft1 (cost=0.00..250000.00 rows=100000000 width=6) (actual time=0.518..3868.533 rows=3107 loops=1)
Output: ft1.c1, ft1.id
Filter: (ft1.c1 = 1)
Rows Removed by Filter: 99996893
-> Hash (cost=25000.00..25000.00 rows=10000000 width=4) (actual time=398.192..398.192 rows=311 loops=1)
Output: ft2.id
Buckets: 1048576 Batches: 32 Memory Usage: 8193kB
-> Foreign Scan on public.ft2 (cost=0.00..25000.00 rows=10000000 width=4) (actual time=0.404..393.045 rows=311 loops=1)
Output: ft2.id
Filter: (ft2.c1 = 1)
Rows Removed by Filter: 9999689
Planning time: 0.118 ms
Execution time: 4394.235 ms
(30 rows)
7. When the database is restarted, the gstore_fdw external table content is cleared.
Problem
if you enable the compression property of the gstore_fdw field, the database will CRASH when you write this field.
https://github.com/heterodb/pg-strom/issues/368
this version has been fixed.
https://github.com/heterodb/pg-strom/commit/06abf8a73d484a09cc58ec794e4d61bfe1cd5d01
summary
- test1: 9 fields and 10 million records.
- test2 table fields: 9, records: 0.1 billion.
- CPU:INTEL i7 8550u.
- GPU:NVIDIA MX150.
- SSD: Samsung SM961 256G.
| Case | computing unit | time-consuming |
|---|
HeteroDB pg_strom is a GPU acceleration plug-in for PostgreSQL. Currently, PostgreSQL 11 is supported.
Queries can be accelerated in these scenarios, which is ideal for computing (OLAP) scenarios.
1. FILTER
2. Aggregation
3. JOIN
4, GROUP
PG_strom also introduces some advanced features:
1. Combined with PG CPU parallel computing, the hybrid parallel of CPU and GPU is realized, greatly improving the computing capability.
2. GPU directly accesses SSD, saving memory, shortening access path, and improving access throughput
3. Create a copy of the external column store format of the heap table (which can be stored in memory directories or normal directories. We recommend that you store high-speed SSD directories). The custom scan automatically identifies the data. If a column store copy exists, column-store replicas are preferentially used to improve OLAP SQL performance.
With ccache, the acceleration of civilian GPU like MX150 is 3 times faster than that of 8 parallel I7 8550U CPUs.
4. Tables that often need to be calculated can be loaded into the memory of the GPU. When the GPU repeatedly calculates this part of data, it does not need to be repeatedly loaded from the memory or disk.
5. Combined with the intelligent JOIN and GROUP of PG 11 partition table, parallel computing capability can be improved.
PostgreSQL 11 preview-intelligent parallel JOIN of partitioned tables (similar to MPP architecture, performance increases)
PostgreSQL 11 preview-intelligent parallel aggregation of partitioned tables and grouping computing (similar to MPP architecture, performance Surge)
the introduction of GPU undoubtedly improves the analysis capability of the database. A series of tests on pg_strom are carried out using civil hardware. The hardware in production needs to be tested much better, and the acceleration of GPU will be more obvious.
Compared with non-GPU-DIO-SSD, GPU-DIO-SSD avoids the need to bypass the memory path for reading data. The overall performance is improved. However, this GPU itself is an entry-level, so it cannot achieve the performance of CPU I7 8550U.
At present, there is still room for polishing the stability of heteroDB. kaigai responds in a timely manner. kaigai will FIX the ISSUE immediately.
Reference
https://github.com/heterodb/pg-strom
http://heterodb.github.io/pg-strom/ref_params/
https://www.brytlyt.com/
https://images.nvidia.com/content/tesla/pdf/Apps-Catalog-March-2016.pdf
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